Wednesday, July 18, 2012

DNA 101: Deciphering Biological Information


I just finished reading Chapter 9: Evidence of Biological Information for this Sunday. You should all be happy to know that it is relatively short! When you are reading through this week’s material, I suggest that you read it once maybe straight through trying to get the general gist of what is being said. Strobel tries to emphasize the point that the molecule holding our genetic information, DNA, is extremely complex and would require an intelligent source to create diversity  for the molecules that make up our cells. He examines the way a molecule might be developed gradually, such as self-organization. However, go back and do some research because I believe it is important that you understand how DNA functions, at least to a basic degree, so that you can be amazed at its complexity! On Sunday I will be prefacing our conversation with a DNA 101 session. I want to throw out there that genetics is a quickly growing topic. Our knowledge base has exploded since the discovery of the structure of DNA in 1953 and more recently grown with the completion of the Human Genome Project in 2003. So if you feel like this is foreign and new to you, it’s ok! It’s kind of new to everyone!
                 
Here are some resources to help as you read.
    Broad overview of DNA components and structure
   Feel free to look at everything, but specifically:
   -Cells and DNA; ii. What is DNA?; iv. What is a gene?; What is a chromosome?
   -How Genes Work: i What are proteins and what do they do?; ii. How do genes direct the production of proteins?; iii. Can genes be turned on and off in the cells?
   See “Flow of Information” and “Genetic Code”
> OR A VIDEO--http://www.youtube.com/watch?v=-ygpqVr7_xs (The Central Dogma)

And for some laughs……http://www.youtube.com/watch?v=_Q2Ba2cFAew (Central Dogma Song)

When we talk about DNA, we are talking about a double helical structure which is similar to a ladder twisted to resemble a spiral staircase.



The sides of this ladder are made up of two components, a sugar and a phosphate, that alternate to make a sturdy backbone. The rungs of this ladder are formed by specialized pieces known as nitrogenous bases. There are four nitrogenous bases: A, C, T, and G also known as adenine, cytosine, thymine, and guanine, respectively. These four letters function to as the information source for the proteins necessary to the cell. These letters are independently arranged along the length of the sugar-phosphate side rails. However, in pairing up to form a complete rung, only specific interactions may take place. (A goes with T; C goes with G). The interaction between the bases (hydrogen bonds) knits together the two strands of DNA to form the double helix.

 So DNA acts as the holder of all our genetic information and resides in the nucleus of the cell. But how is this information extracted so that it can be put to use?

http://www.bio.miami.edu/~cmallery/150/gene/central.dogma2.jpg

This takes us to a little thing known as the Central Dogma. The Central Dogma describes the process of moving from DNA to proteins.

Our journey starts with the need for a particular protein. When this happens, a complex of proteins assembles on the stretch of DNA that corresponds to the protein in need. The DNA is unzipped so that a single strand (a backbone with attached bases) can act as a template for creating a new strand, known as messenger RNA, or simply mRNA. Messenger RNA closely resembles DNA. It has a sugar phosphate backbone with attached nitrogenous bases. The most notable difference is a substitution of U (uracil) for T (thymine). Then, units known as nucleotides (which consist of a sugar+phophate+nitrogenous base) are fit like puzzle pieces to the matching template on DNA. Once the stretch of DNA is paired in a complementary fashion , the mRNA is released. This mRNA will be processed and then leaves the nucleus so that it may proceed to the factory-like unit known as the ribosome.



The ribosome is the site of protein synthesis. The process of creating mRNA is known as transcription. The next phase where mRNA is used to manufacture proteins is known as translation.

Back to the story…mRNA moves out of the nucleus and travels through the interior of the cell until it encounters the ribosome. As the ribosome pulls the mRNA through its subunits, proteins are made in an intricate process involving a three-letter code. These three letter codes, known as codons, correspond to one of twenty amino acids. There are 64 codons that are used in building proteins. How is this done, you ask?


http://hyperphysics.phy-astr.gsu.edu/hbase/organic/imgorg/translation2.gif

There are special players known as transfer RNA, or tRNA. Transfer RNA is responsible for matching the right amino acid to each codon. They do this through a structure known as the anticodon. Each tRNA has a three letter anticodon that can be matched (again, kind of like a puzzle piece) to its complementary codon. So in the depths of the ribosome, tRNAs are matching up and moving out, leaving behind their amino acids on a growing peptide chain. Once all the amino acids are assembled, a protein is released.
                  Viola! Through the complexity of DNA we have arrived at a protein.

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